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PROF. B. GOPAL'S LAB
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PDB Structures

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​87. MsmUdgX H109S/Q53A double mutant. PDB ID: 8IIR

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​86. MsmUdgX H109S/R184A double mutant. PDB ID: 8IIS

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85. Complex form of MsmUdgX H109S/R184A double mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109S/R184A. PDB ID: 8IIT

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84. H109Q mutant of uracil DNA glycosylase X. PDB ID: 8IIO

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83. Complex form of MsmUdgX H109Q mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109Q. PDB ID: 8IIP

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​82. MsmUdgX H109S/E52N double mutant. PDB ID: 8IIQ

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81. Complex form of MsmUdgX H109G mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109G. PDB ID: 8IIL

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80. H109K mutant of uracil DNA glycosylase X. PDB ID: 8IIM

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79. Complex form of MsmUdgX H109K mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109K. PDB ID: 8IIN

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78. H109C mutant of uracil DNA glycosylase X. PDB ID: 8IIH

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77. Complex form of MsmUdgX H109C mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109C. PDB ID: 8III

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76. H109G mutant of uracil DNA glycosylase X. PDB ID: 8IIJ

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75. Complex form of MsmUdgX and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX. PDB ID: 8IIE

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74. H109A mutant of uracil DNA glycosylase X. PDB ID: 8IIF

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73. Complex form of MsmUdgX H109A mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by UdgX H109A. PDB ID: 8IIG

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72. ​Structure of the M. tuberculosis HtrA N269A mutant at room-temperature.
PDB ID: 7W4R

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71.Structure of the M. tuberculosis HtrA S363A mutant at room-temperature.
PDB ID: 7W4S

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​70. Structure of the M. tuberculosis HtrA S367A mutant at room-temperature.
PDB ID: 7W4T

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69. ​Structure of the M. tuberculosis HtrA S407A mutant at room-temperature.
PDB ID: 7W4U

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68. ​Structure of the M. tuberculosis HtrA S413A mutant at room temperature.
PDB ID: 7W4V

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67. ​Structure of the M. tuberculosis HtrA K436A mutant at room-temperature.
PDB ID: 7W4W

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66. ​Structure of the M. tuberculosis HtrA S367A mutant.
PDB ID: 7VYZ

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65. Structure of the M. tuberculosis HtrA S407A mutant.
PDB ID: 7VZ0

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64. ​Structure of the M. tuberculosis HtrA N269A mutant.
PDB ID: 7W21

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​63. Structure of the M. tuberculosis HtrA K436A mutant.
PDB ID: 7W22

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62. ​Structure of the M. tuberculosis HtrA S363A mutant
PDB ID: 7W23

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61. ​Structure of the M. tuberculosis HtrA N383A mutant.
PDB ID: 7W24
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60.​Structure of the M. tuberculosis HtrA S413A mutant.
PDB ID:7W25

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​57. Structure-guided studies of the Holliday junction resolvase RuvX provide novel insights into ATP-stimulated cleavage of branched DNA and RNA substrates. PDB ID: 7ESS

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​54. Crystal structure of Mycobacterium tuberculosis HtrA1 (Rv1223) in regulated conformation.
PDB ID: 6IEO

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59. Crystal structure of the single-stranded dna-binding protein from Mycobacterium tuberculosis- Form III. PDB ID: ​7F5Y

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​56. Structure of RNase J1 from Staphylococcus epidermidis.
PDB ID: 6K6S

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​53. Crystal structure of PNPase from Staphylococcus epidermidis.
PDB ID: 5YJJ

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58. Crystal structure of the single-stranded dna-binding protein from Mycobacterium tuberculosis- Form III. PDB ID: 7F5Z

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​55. Structure of RNase J2 from Staphylococcus epidermidis.
PDB ID: 6K6W

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​52. Crystal structure of Mycobacterium tuberculosis extracytoplasmic function sigma factor SigJ.
PDB ID: 5XE7

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​51. Crystal structure of Bacillus subtilis BacC Dihydroanticapsin 7-dehydrogenase in complex with NADH. PDB ID:5ITV

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​50. Crystal structure of Bacillus subtilis BacC Dihydroanticapsin 7-dehydrogenase.
PDB ID: 5ITW

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​49. Crystal structure of Dihydrodipicolinate Synthase from Mycobacterium tuberculosis in complex with alpha-ketopimelic acid. PDB ID: 5J5D

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​48. Crystal structure of AgrA LytTR domain in complex with promoters.
PDB ID: 4XQQ

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47. ​Crystal structure of AgrA LytTR domain in complex with promoters.
PDB ID: 4XQJ

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​46. Crystal structure of AgrA LytTR domain in complex with promoters.
PDB ID: 4XQN

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​45. Structure of AgrA LytTR domain in complex with promoters.
PDB ID: 4XXE

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​44. Structure of AgrA LytTR domain
PDB ID: 4XYO

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43. Structure of AgrA LytTR domain in complex with promoters
PDB ID: 4XYQ

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​42.Crystal structure of S. aureus Homoserine Dehydrogenase at pH7.0. PDB ID: 4PG6

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​41. Crystal structure of S. aureus Homoserine Dehydrogenase at pH6.0. PDB ID: 4PG4

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40. Crystal structure of S. aureus Homoserine Dehydrogenase at pH6.5. PDB ID: 4PG5

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39. ​Crystal structure of S. aureus Homoserine Dehydrogenase at pH7.5.
PDB ID: 4PG7

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38. ​Crystal structure of S. aureus Homoserine Dehydrogenase at pH8.5.
PDB ID: 4PG8

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37. ​Crystal structure of ATP binding domain of AgrC from Staphylococcus aureus.
PDB ID: 4BXI

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36. ​Structure of Mycobacterium tuberculosis extracytoplasmic function sigma factor SigK in complex with the cytosolic domain of its cognate anti-sigma factor RskA. PDB ID: 4NQW

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35. ​Crystal structure of YwfH, NADPH dependent reductase involved in Bacilysin biosynthesis.
PDB ID: 3U49

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34. ​Crystal structure of YwfH, NADPH dependent reductase involved in Bacilysin biosynthesis.
PDB ID: 3U4C

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33. ​Crystal structure of YwfH, NADPH dependent reductase involved in Bacilysin biosynthesis. PDB ID: 3U4D

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32. ​The crystal structure of a putative aminohydrolase from methicillin resistant Staphylococcus aureus. PDB ID: 4EWT

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31. ​Crystal structure of SigD4 in complex with its negative regulator RsdA. PDB ID: 3VEP

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30. ​Crystal structure of -35 promoter binding domain of SigD of Mycobacterium tuberculosis. PDB ID: 3VFZ

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29. ​Crystal structure of the catalytic domain of PTP10D from Drosophila melanogaster. PDB ID: 3S3E

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28. ​Crystal Structure of the catalytic domain of PTP10D from Drosophila melanogaster with a small molecule inhibitor Vanadate.                                            PDB ID: 3S3F

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​27.Crystal structure of the catalytic domain of PTP10D from Drosophila melanogaster with a phosphopeptide substrate GP4. PDB                                            ID:3S3H

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26. ​Crystal structure of the catalytic domain of PTP10D from Drosophila melanogaster with a small molecular inhibitor para-NitroCatechol Sulphate. PDB ID: 3S3K

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​25. The Crystal Structure of Dihydrodipicolinate reductase from Staphylococcus aureus. PDB ID: 3QY9

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​24. Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase
PDB ID:3Q83

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23. ​Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with GTP. PDB ID: 3Q86

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22. ​Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with CDP. PDB ID: 3Q89

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21. Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with ADP and Vanadate.
PDB ID: 3Q8Y

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20. Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with ADP. PDB ID: 3Q8U

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19. ​Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with UDP. PDB ID: 3Q8V

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18. ​Crystal structure of Staphylococcus aureus metallopeptidase (Sapep/DapE) in the apo-form. PDB ID: 3KHX

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17. ​Crystal Structure of R350A mutant of Staphylococcus aureus metallopeptidase (Sapep/DapE) in the apo-form. PDB ID: 3KHZ

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16. ​Crystal structure of Staphylococcus aureus metallopeptidase (Sapep/DapE) in the Mn2+ bound form. PDB ID: 3KI9

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15. ​Crystal Structure of the PAS domain of Rv1364c.​ PDB ID: 3KX0

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14. ​Crystal structure of BacB, an enzyme involved in Bacilysin synthesis, in triclinic form. PDB ID: 3H9A

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13. ​Crystal structure of Mycobacterium tuberculosis anti-sigma factor RslA in complex with -35 promoter binding domain of sigL.
PDB ID: 3HUG

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12. ​Structural and substrate-binding studies of pantothenate synthenate (PS)provide insights into homotropic                                                  inhibition by pantoate                                       in PS's. PDB ID: 3GUZ

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11. ​Crystal structure of Rv2704, a member of highly conserved YjgF/YER057c/UK114 family, from Mycobacterium tuberculosis. PDB ID:                                         3I7T

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10. ​Crystal structure of Penicillin binding protein 4 from Staphylococcus aureus COL in complex with Cefotaxime. PDB                                                 ID:3HUM

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9. ​Crystal structure of Penicillin binding protein 4 from Staphylococcus aureus COL in complex with Ampicillin. PDB ID: 3HUN

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8. ​Crystal structure of BacB, an enzyme involved in Bacilysin synthesis, in monoclinic form. PDB ID: 3H7J

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7. Crystal structure of BacB, an enzyme involved in Bacilysin synthesis, in tetragonal form. PDB ID: 3H7Y

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6. ​Structure of the catalytic domain of the chick retinal neurite inhibitor-Receptor Protein Tyrosine Phosphatase CRYP-2/cPTPRO
                                             PDB ID: 2PI7

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5. ​Crystal structure of the Pribnow Box recognition region of SigC from Mycobacterium tuberculosis.
PDB ID: 2O7G

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​4. Crystal structure of the "-35 element" promoter recognition domain of Mycobacterium tuberculosis SigC
                                            PDB ID: 2O8X

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​3. Crystal structure of YxaG, a dioxygenase from Bacillus subtilis
PDB ID: 1Y3T

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​2. Crystal Structure of Mycobacterium tuberculosis NusA
PDB ID: 1K0R

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1. ​Crystal structure of NusB from Mycobacterium tuberculosis
PDB ID: 1EYV

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